Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs7126339 | chr11:1508955 | T/C | 8.3E-5 | 509 | 5.47 | 37.6 | 37.18 | KM Plot |
KIRC | rs71281885 | chr3:48374374 | G/GA | 9.89E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs71320593 | chr21:44454098 | T/G | 2.47E-7 | 506 | 37.42 | 40.1 | 3.37 | KM Plot |
KIRC | rs71323391 | chr3:48295700 | C/T | 1.87E-5 | 495 | 37.73 | 37.75 | 21.12 | KM Plot |
KIRC | rs71323394 | chr3:48357208 | C/T | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs71323395 | chr3:48374077 | G/A | 9.89E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs71323396 | chr3:48374734 | T/G | 0.0001 | 484 | 37.53 | 37.77 | 22.42 | KM Plot |
KIRC | rs71323397 | chr3:48374874 | A/G | 9.89E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs71395910 | chr2:67598396 | A/AT | 2.31E-7 | 506 | 37.33 | 37.73 | 2.03 | KM Plot |
KIRC | rs71395918 | chr2:67670957 | C/CAG | 2.22E-7 | 505 | 37.37 | 37.7 | 2.03 | KM Plot |
KIRC | rs71411986 | chr2:67672298 | C/T | 2.26E-7 | 504 | 37.47 | 37.67 | 2.03 | KM Plot |
KIRC | rs71411987 | chr2:67672662 | T/C | 2.26E-7 | 504 | 37.47 | 37.67 | 2.03 | KM Plot |
KIRC | rs71411988 | chr2:67672992 | G/C | 2.26E-7 | 504 | 37.47 | 37.67 | 2.03 | KM Plot |
KIRC | rs71544657 | chr6:25914035 | G/GT | 5.12E-9 | 500 | 37.77 | 33.82 | 2.38 | KM Plot |
KIRC | rs71557315 | chr6:26041870 | G/T | 1.19E-8 | 505 | 37.6 | 35.4 | 3.37 | KM Plot |